bamtools
Link to section 'Description' of 'bamtools' Description
C++ API & command-line toolkit for working with BAM data.
Link to section 'Versions' of 'bamtools' Versions
- Anvil: 2.5.2
Link to section 'Commands' of 'bamtools' Commands
- bamtools
Link to section 'Module' of 'bamtools' Module
You can load the modules by:
module load bamtools
Link to section 'Example job' of 'bamtools' Example job
To run bamtools our our clusters:
#!/bin/bash
#SBATCH -A Allocation # Allocation name
#SBATCH -t 20:00:00
#SBATCH -N 1
#SBATCH -n 24
#SBATCH -p PartitionName
#SBATCH --job-name=bamtools
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module load bamtools
bamtools convert -format fastq -in in.bam -out out.fastq