beagle
Link to section 'Description' of 'beagle' Description
Beagle is a software package for phasing genotypes and for imputing ungenotyped markers.
Link to section 'Versions' of 'beagle' Versions
- Anvil: 5.1
Link to section 'Commands' of 'beagle' Commands
- beagle
Link to section 'Module' of 'beagle' Module
You can load the modules by:
module load beagle
Link to section 'Example job' of 'beagle' Example job
To run Beagle on our clusters:
#!/bin/bash
#SBATCH -A myAllocation
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=beagle
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module load beagle
beagle gt=test.vcf.gz out=test.out