blasr
Link to section 'Introduction' of 'blasr' Introduction
Blasr Blasr is a read mapping program that maps reads to positions in a genome by clustering short exact matches between the read and the genome, and scoring clusters using alignment.
For more information, please check its website: https://biocontainers.pro/tools/blasr.
Link to section 'Versions' of 'blasr' Versions
- 5.3.5
Link to section 'Commands' of 'blasr' Commands
- blasr
Link to section 'Module' of 'blasr' Module
You can load the modules by:
module load biocontainers
module load blasr
Link to section 'Example job' of 'blasr' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Blasr on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=blasr
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers blasr
blasr reads.bas.h5 ecoli_K12.fasta -sam