fastani
Link to section 'Introduction' of 'fastani' Introduction
FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI).
For more information, please check its website: https://biocontainers.pro/tools/fastani and its home page on Github.
Link to section 'Versions' of 'fastani' Versions
- 1.32
- 1.33
Link to section 'Commands' of 'fastani' Commands
- fastANI
Link to section 'Module' of 'fastani' Module
You can load the modules by:
module load biocontainers
module load fastani
Link to section 'Example job' of 'fastani' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run FastANI on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=fastani
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers fastani
fastANI -q cmm.fasta -r cms.fasta -o cm_cs_out
fastANI -q cmm.fasta -r cms.fasta --visualize -o cm_cs_visualize_out