htslib
Link to section 'Introduction' of 'htslib' Introduction
Htslib is a C library for high-throughput sequencing data formats.
For more information, please check its website: https://biocontainers.pro/tools/htslib and its home page on Github.
Link to section 'Versions' of 'htslib' Versions
- 1.14
- 1.15
- 1.16
Link to section 'Commands' of 'htslib' Commands
- bgzip
- htsfile
- tabix
Link to section 'Module' of 'htslib' Module
You can load the modules by:
module load biocontainers
module load htslib
Link to section 'Example job' of 'htslib' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Htslib on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=htslib
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers htslib
tabix sorted.gff.gz chr1:10,000,000-20,000,000