pyensembl
Link to section 'Introduction' of 'pyensembl' Introduction
Pyensembl is a Python interface to Ensembl reference genome metadata such as exons and transcripts.
For more information, please check its website: https://biocontainers.pro/tools/pyensembl and its home page on Github.
Link to section 'Versions' of 'pyensembl' Versions
- 1.9.4
Link to section 'Commands' of 'pyensembl' Commands
- pyensembl
- python
- python3
Link to section 'Module' of 'pyensembl' Module
You can load the modules by:
module load biocontainers
module load pyensembl
Link to section 'Example job' of 'pyensembl' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Pyensembl on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=pyensembl
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers pyensembl