ltrpred
Link to section 'Introduction' of 'ltrpred' Introduction
LTRpred(ict): de novo annotation of young and intact retrotransposons.
Docker hub: https://hub.docker.com/r/drostlab/ltrpred
Home page: https://github.com/HajkD/LTRpred
Link to section 'Versions' of 'ltrpred' Versions
- 1.1.0
Link to section 'Commands' of 'ltrpred' Commands
- R
- Rscript
Link to section 'Module' of 'ltrpred' Module
You can load the modules by:
module load biocontainers
module load ltrpred
Link to section 'Example job' of 'ltrpred' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run ltrpred on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=ltrpred
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers ltrpred