seidr
Link to section 'Introduction' of 'seidr' Introduction
Seidr is a community gene network inference and exploration toolkit.
For more information, please check its website: https://biocontainers.pro/tools/seidr and its home page on Github.
Link to section 'Versions' of 'seidr' Versions
- 0.14.2
Link to section 'Commands' of 'seidr' Commands
- correlation
- seidr
- mi
- pcor
- narromi
- plsnet
- llr-ensemble
- svm-ensemble
- genie3
- tigress
- el-ensemble
- makeconv
- genrb
- gencfu
- gencnval
- gendict
- tomsimilarity
Link to section 'Module' of 'seidr' Module
You can load the modules by:
module load biocontainers
module load seidr
Link to section 'Example job' of 'seidr' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Seidr on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=seidr
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers seidr