last
Link to section 'Introduction' of 'last' Introduction
Last is used to find & align related regions of sequences.
For more information, please check its website: https://biocontainers.pro/tools/last and its home page on Gitlab.
Link to section 'Versions' of 'last' Versions
- 1268
- 1356
- 1411
- 1418
Link to section 'Commands' of 'last' Commands
- last-dotplot
- last-map-probs
- last-merge-batches
- last-pair-probs
- last-postmask
- last-split
- last-split5
- last-train
- lastal
- lastal5
- lastdb
- lastdb5
Link to section 'Module' of 'last' Module
You can load the modules by:
module load biocontainers
module load last
Link to section 'Example job' of 'last' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Last on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=last
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers last
lastdb humdb humanMito.fa
lastal humdb fuguMito.fa > myalns.maf