cdbtools
Link to section 'Introduction' of 'cdbtools' Introduction
Cdbtools is a collection of tools used for creating indices for quick retrieval of any particular sequences from large multi-FASTA files.
For more information, please check its website: https://biocontainers.pro/tools/cdbtools.
Link to section 'Versions' of 'cdbtools' Versions
- 0.99
Link to section 'Commands' of 'cdbtools' Commands
- cdbfasta
- cdbyank
Link to section 'Module' of 'cdbtools' Module
You can load the modules by:
module load biocontainers
module load cdbtools
Link to section 'Example job' of 'cdbtools' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Cdbtools on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=cdbtools
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers cdbtools
cdbfasta genome.fa
cdbyank -a 'seq_1' genome.fa.cidx