plotsr
Link to section 'Introduction' of 'plotsr' Introduction
Plotsr generates high-quality visualisation of synteny and structural rearrangements between multiple genomes. For this, it uses the genomic structural annotations between multiple chromosome-level assemblies.
Home page: https://github.com/schneebergerlab/plotsr
Link to section 'Versions' of 'plotsr' Versions
- 0.5.4
Link to section 'Commands' of 'plotsr' Commands
- plotsr
Link to section 'Module' of 'plotsr' Module
You can load the modules by:
module load biocontainers
module load plotsr
Link to section 'Example job' of 'plotsr' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run plotsr on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=plotsr
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers plotsr
plotsr syri.out refgenome qrygenome -H 8 -W 5