minipolish
Link to section 'Introduction' of 'minipolish' Introduction
Minipolish is a tool for Racon polishing of miniasm assemblies.
Docker hub: https://hub.docker.com/r/staphb/minipolish
Home page: https://github.com/rrwick/Minipolish
Link to section 'Versions' of 'minipolish' Versions
- 0.1.3
Link to section 'Commands' of 'minipolish' Commands
- minipolish
Link to section 'Module' of 'minipolish' Module
You can load the modules by:
module load biocontainers
module load minipolish
Link to section 'Example job' of 'minipolish' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run minipolish on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 8
#SBATCH --job-name=minipolish
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers minipolish
minipolish -t 8 long_reads.fastq.gz assembly.gfa > polished.gfa