rush
Link to section 'Introduction' of 'rush' Introduction
rush is a tool similar to GNU parallel and gargs. rush borrows some idea from them and has some unique features, e.g., supporting custom defined variables, resuming multi-line commands, more advanced embedded replacement strings.
For more information, please check its home page on Github.
Link to section 'Versions' of 'rush' Versions
- 0.4.2
Link to section 'Commands' of 'rush' Commands
- rush
Link to section 'Module' of 'rush' Module
You can load the modules by:
module load biocontainers
module load rush
Link to section 'Example job' of 'rush' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run rush on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=rush
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers rush