varlociraptor
Link to section 'Introduction' of 'varlociraptor' Introduction
Varlociraptor implements a novel, unified fully uncertainty-aware approach to genomic variant calling in arbitrary scenarios.
For more information, please check its website: https://biocontainers.pro/tools/varlociraptor and its home page on Github.
Link to section 'Versions' of 'varlociraptor' Versions
- 4.11.4
Link to section 'Commands' of 'varlociraptor' Commands
- varlociraptor
Link to section 'Module' of 'varlociraptor' Module
You can load the modules by:
module load biocontainers
module load varlociraptor
Link to section 'Example job' of 'varlociraptor' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Varlociraptor on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=varlociraptor
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers varlociraptor
varlociraptor call variants tumor-normal --purity 0.75 --tumor