mash
Link to section 'Introduction' of 'mash' Introduction
Mash is a fast sequence distance estimator that uses MinHash.
For more information, please check its website: https://biocontainers.pro/tools/mash and its home page on Github.
Link to section 'Versions' of 'mash' Versions
- 2.3
Link to section 'Commands' of 'mash' Commands
- mash
Link to section 'Module' of 'mash' Module
You can load the modules by:
module load biocontainers
module load mash
Link to section 'Example job' of 'mash' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Mash on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=mash
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers mash
mash dist genome1.fasta genome2.fasta