meme
Link to section 'Introduction' of 'meme' Introduction
Meme is a collection of tools for the discovery and analysis of sequence motifs.
For more information, please check its website: https://biocontainers.pro/tools/meme and its home page: https://meme-suite.org/meme/.
Link to section 'Versions' of 'meme' Versions
- 5.3.3
- 5.4.1
- 5.5.0
Link to section 'Commands' of 'meme' Commands
- ame
- centrimo
- dreme
- dust
- fimo
- glam2
- glam2scan
- gomo
- mast
- mcast
- meme
- meme-chip
- momo
- purge
- spamo
- tomtom
Link to section 'Module' of 'meme' Module
You can load the modules by:
module load biocontainers
module load meme
Link to section 'Example job' of 'meme' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Meme on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=meme
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers meme
meme seq.fasta -dna -mod oops -pal
meme-chip Klf1.fna -o memechip_klf1_out