signalp6
Link to section 'Introduction' of 'signalp6' Introduction
SignalP predicts the presence and location of signal peptide cleavage sites in amino acid sequences from different organisms: Gram-positive prokaryotes, Gram-negative prokaryotes, and eukaryotes.
Home page: https://services.healthtech.dtu.dk/service.php?SignalP
Link to section 'Versions' of 'signalp6' Versions
- 6.0-fast
- 6.0-slow
Link to section 'Commands' of 'signalp6' Commands
- signalp6
Link to section 'Module' of 'signalp6' Module
You can load the modules by:
module load biocontainers
module load signalp6
Link to section 'Example job for fast mode' of 'signalp6' Example job for fast mode
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run signalp6 on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 2:00:00
#SBATCH -N 1
#SBATCH -n 24
#SBATCH --job-name=signalp6-fast
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers signalp6/6.0-fast
signalp6 --write_procs 24 --fastafile proteins_clean.fasta \
--organism euk --output_dir output_fast \
--format txt --mode fast
Link to section 'Example job for slow mode' of 'signalp6' Example job for slow mode
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run signalp6 on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 12:00:00
#SBATCH -N 1
#SBATCH -n 24
#SBATCH --job-name=signalp6-slow
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers signalp6/6.0-slow
signalp6 --write_procs 24 --fastafile proteins_clean.fasta \
--organism euk --output_dir output_slow \
--format txt --mode slow
signalp6 --write_procs 24 --fastafile proteins_clean.fasta \
--organism euk --output_dir output_slow-sequential \
--format txt --mode slow-sequential