miniasm
Link to section 'Introduction' of 'miniasm' Introduction
Miniasm is a very fast OLC-based de novo assembler for noisy long reads.
For more information, please check its website: https://biocontainers.pro/tools/miniasm and its home page on Github.
Link to section 'Versions' of 'miniasm' Versions
- 0.3_r179
Link to section 'Commands' of 'miniasm' Commands
- miniasm
- minidot
Link to section 'Module' of 'miniasm' Module
You can load the modules by:
module load biocontainers
module load miniasm
Link to section 'Example job' of 'miniasm' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Miniasm on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 12
#SBATCH --job-name=miniasm
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers miniasm
miniasm -f Elysia_ont_test.fq Elysia_reads.paf.gz \
> Elysia_reads.gfa