actc
Link to section 'Introduction' of 'actc' Introduction
Actc is used to align subreads to ccs reads.
Home page: https://github.com/PacificBiosciences/actc
Link to section 'Versions' of 'actc' Versions
- 0.2.0
Link to section 'Commands' of 'actc' Commands
- actc
Link to section 'Module' of 'actc' Module
You can load the modules by:
module load biocontainers
module load actc
Link to section 'Example job' of 'actc' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run actc on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=actc
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers actc
actc subreads.bam ccs.bam subreads_to_ccs.bam