gffcompare
Link to section 'Introduction' of 'gffcompare' Introduction
Gffcompare is used to compare, merge, annotate and estimate accuracy of one or more GFF files.
For more information, please check its website: https://biocontainers.pro/tools/gffcompare and its home page: https://ccb.jhu.edu/software/stringtie/gffcompare.shtml.
Link to section 'Versions' of 'gffcompare' Versions
- 0.11.2
Link to section 'Commands' of 'gffcompare' Commands
- gffcompare
Link to section 'Module' of 'gffcompare' Module
You can load the modules by:
module load biocontainers
module load gffcompare
Link to section 'Example job' of 'gffcompare' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Gffcompare on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=gffcompare
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers gffcompare
gffcompare -r annotation.gff transcripts.gtf