bmge
Link to section 'Introduction' of 'bmge' Introduction
Bmge is a program that selects regions in a multiple sequence alignment that are suited for phylogenetic inference.
For more information, please check its website: https://biocontainers.pro/tools/bmge and its home page: https://bioweb.pasteur.fr/packages/pack@BMGE@1.12.
Link to section 'Versions' of 'bmge' Versions
- 1.12
Link to section 'Commands' of 'bmge' Commands
- bmge
Link to section 'Module' of 'bmge' Module
You can load the modules by:
module load biocontainers
module load bmge
Link to section 'Example job' of 'bmge' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Bmge on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=bmge
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers bmge
bmge -i seq.fa -t AA -o out.phy