trax
Link to section 'Introduction' of 'trax' Introduction
tRAX
(tRNA Analysis of eXpression) is a software package built for in-depth analyses of tRNA-derived small RNAs (tDRs), mature tRNAs, and inference of RNA modifications from high-throughput small RNA sequencing data.
Docker hub: https://hub.docker.com/r/ucsclowelab/trax and its home page on Github.
Link to section 'Versions' of 'trax' Versions
- 1.0.0
Link to section 'Commands' of 'trax' Commands
- TestRun.bash
- quickdb.bash
- maketrnadb.py
- trimadapters.py
- processamples.py
Link to section 'Module' of 'trax' Module
You can load the modules by:
module load biocontainers
module load trax
Link to section 'Example job' of 'trax' Example job
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run tRAX on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=trax
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers trax