lambda
Link to section 'Introduction' of 'lambda' Introduction
Lambda is a local aligner optimized for many query sequences and searches in protein space.
For more information, please check its website: https://biocontainers.pro/tools/lambda and its home page: http://seqan.github.io/lambda/.
Link to section 'Versions' of 'lambda' Versions
- 2.0.0
Link to section 'Commands' of 'lambda' Commands
- lambda2
Link to section 'Module' of 'lambda' Module
You can load the modules by:
module load biocontainers
module load lambda
Link to section 'Example job' of 'lambda' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Lambda on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=lambda
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers lambda
lambda2 mkindexp -d uniprot_sprot.fasta
lambda2 searchp \
-q proteins.fasta \
-i uniprot_sprot.fasta.lambda