sprod
Link to section 'Introduction' of 'sprod' Introduction
Sprod: De-noising Spatially Resolved Transcriptomics Data Based on Position and Image Information.
Home page: https://github.com/yunguan-wang/SPROD
Link to section 'Versions' of 'sprod' Versions
- 1.0
Link to section 'Commands' of 'sprod' Commands
- python
- python3
- sprod.py
Link to section 'Module' of 'sprod' Module
You can load the modules by:
module load biocontainers
module load sprod
Link to section 'Example job' of 'sprod' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run sprod on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=sprod
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers sprod
python3 test_examples.py