weblogo
Link to section 'Introduction' of 'weblogo' Introduction
Weblogo is a web based application designed to make the generation of sequence logos as easy and painless as possible.
For more information, please check its website: https://biocontainers.pro/tools/weblogo and its home page: http://weblogo.threeplusone.com.
Link to section 'Versions' of 'weblogo' Versions
- 3.7.8
Link to section 'Commands' of 'weblogo' Commands
- weblogo
Link to section 'Module' of 'weblogo' Module
You can load the modules by:
module load biocontainers
module load weblogo
Link to section 'Example job' of 'weblogo' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Weblogo on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=weblogo
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers weblogo
weblogo --resolution 600 --format PNG \
<seq.fasta >logo.png