bioconvert
Link to section 'Introduction' of 'bioconvert' Introduction
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.
For more information, please check its website: https://biocontainers.pro/tools/bioconvert.
Link to section 'Versions' of 'bioconvert' Versions
- 0.4.3
- 0.5.2
- 0.6.1
- 0.6.2
Link to section 'Commands' of 'bioconvert' Commands
- bioconvert
Link to section 'Module' of 'bioconvert' Module
You can load the modules by:
module load biocontainers
module load bioconvert
Link to section 'Example job' of 'bioconvert' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Bioconvert on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=bioconvert
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers bioconvert
bioconvert fastq2fasta input.fastq output.fa