mashtree
Link to section 'Introduction' of 'mashtree' Introduction
Mashtree is a tool to create a tree using Mash distances.
For more information, please check its website: https://biocontainers.pro/tools/mashtree and its home page on Github.
Link to section 'Versions' of 'mashtree' Versions
- 1.2.0
Link to section 'Commands' of 'mashtree' Commands
- mashtree
- mashtree_bootstrap.pl
- mashtree_cluster.pl
- mashtree_init.pl
- mashtree_jackknife.pl
- mashtree_wrapper_deprecated.pl
Link to section 'Module' of 'mashtree' Module
You can load the modules by:
module load biocontainers
module load mashtree
Link to section 'Example job' of 'mashtree' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Mashtree on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=mashtree
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers mashtree