alien-hunter
Link to section 'Introduction' of 'alien-hunter' Introduction
Alien-hunter is an application for the prediction of putative Horizontal Gene Transfer (HGT) events with the implementation of Interpolated Variable Order Motifs (IVOMs).
For more information, please check its website: https://biocontainers.pro/tools/alien-hunter.
Link to section 'Versions' of 'alien-hunter' Versions
- 1.7.7
Link to section 'Commands' of 'alien-hunter' Commands
- alien_hunter
Link to section 'Module' of 'alien-hunter' Module
You can load the modules by:
module load biocontainers
module load alien_hunter
Link to section 'Example job' of 'alien-hunter' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Alien_hunter on our our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=alien_hunter
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers alien_hunter
alien_hunter genome.fasta output