drep
Link to section 'Introduction' of 'drep' Introduction
Drep is a python program for rapidly comparing large numbers of genomes.
For more information, please check its website: https://biocontainers.pro/tools/drep and its home page on Github.
Link to section 'Versions' of 'drep' Versions
- 3.2.2
Link to section 'Commands' of 'drep' Commands
- dRep
Link to section 'Module' of 'drep' Module
You can load the modules by:
module load biocontainers
module load drep
Link to section 'Example job' of 'drep' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Drep on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=drep
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers drep
dRep compare compare_out -g tests/genomes/*
dRep dereplicate dereplicate_out -g tests/genomes/*