any2fasta
Link to section 'Introduction' of 'any2fasta' Introduction
Any2fasta can convert various sequence formats to FASTA.
BioContainers: https://biocontainers.pro/tools/any2fasta
Home page: https://github.com/tseemann/any2fasta
Link to section 'Versions' of 'any2fasta' Versions
- 0.4.2
Link to section 'Commands' of 'any2fasta' Commands
- any2fasta
Link to section 'Module' of 'any2fasta' Module
You can load the modules by:
module load biocontainers
module load any2fasta
Link to section 'Example job' of 'any2fasta' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run any2fasta on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=any2fasta
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers any2fasta
any2fasta input.gff > out.fasta