crisprcasfinder
CRISPRCasFinder
==============================
CRISPRCasFinder
enables the easy detection of CRISPRs and cas genes in user-submitted sequence data. It is an updated, improved, and integrated version of CRISPRFinder and CasFinder.
Detailed usage can be found here: https://github.com/dcouvin/CRISPRCasFinder
Link to section 'Versions' of 'crisprcasfinder' Versions
- 4.2.20
Link to section 'Commands' of 'crisprcasfinder' Commands
- CRISPRCasFinder.pl
Link to section 'Module' of 'crisprcasfinder' Module
You can load the modules by:
module load biocontainers
module load crisprcasfinder/4.2.20
Link to section 'Example job' of 'crisprcasfinder' Example job
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run CRISPRCasFinder on our our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 2:00:00
#SBATCH -N 1
#SBATCH -n 12
#SBATCH --job-name=CRISPRCasFinder
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers crisprcasfinder/4.2.20
CRISPRCasFinder.pl -in install_test/sequence.fasta -cas -cf CasFinder-2.0.3 -def G -keep