proteinortho
Link to section 'Introduction' of 'proteinortho' Introduction
Proteinortho is a tool to detect orthologous genes within different species.
For more information, please check its website: https://biocontainers.pro/tools/proteinortho and its home page on Gitlab.
Link to section 'Versions' of 'proteinortho' Versions
- 6.0.33
Link to section 'Commands' of 'proteinortho' Commands
- proteinortho
- proteinortho2html.pl
- proteinortho2tree.pl
- proteinortho2xml.pl
- proteinortho6.pl
- proteinortho_cleanupblastgraph
- proteinortho_clustering
- proteinortho_compareProteinorthoGraphs.pl
- proteinortho_do_mcl.pl
- proteinortho_extract_from_graph.pl
- proteinortho_ffadj_mcs.py
- proteinortho_formatUsearch.pl
- proteinortho_grab_proteins.pl
- proteinortho_graphMinusRemovegraph
- proteinortho_history.pl
- proteinortho_singletons.pl
- proteinortho_summary.pl
- proteinortho_treeBuilderCore
Link to section 'Module' of 'proteinortho' Module
You can load the modules by:
module load biocontainers
module load proteinortho
Link to section 'Example job' of 'proteinortho' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Proteinortho on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=proteinortho
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers proteinortho
proteinortho6.pl test/C.faa test/E.faa test/L.faa test/M.faa