merqury
Link to section 'Introduction' of 'merqury' Introduction
Merqury is a tool to evaluate genome assemblies with k-mers and more.
Docker hub: https://hub.docker.com/r/dovetailg/merqury
Home page: https://github.com/marbl/merqury
Link to section 'Versions' of 'merqury' Versions
- 1.3
Link to section 'Commands' of 'merqury' Commands
- merqury.sh
Link to section 'Module' of 'merqury' Module
You can load the modules by:
module load biocontainers
module load merqury
Link to section 'Example job' of 'merqury' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run merqury on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=merqury
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers merqury
merqury.sh F1.k18.meryl col0.hapmer.meryl cvi0.hapmer.meryl \
athal_COL.fasta athal_CVI.fasta test