iqtree
Link to section 'Introduction' of 'iqtree' Introduction
IQ-TREE is an efficient phylogenomic software by maximum likelihood.
For more information, please check its website: https://biocontainers.pro/tools/iqtree and its home page: http://www.iqtree.org.
Link to section 'Versions' of 'iqtree' Versions
- 1.6.12
- 2.1.2
- 2.2.0_beta
Link to section 'Commands' of 'iqtree' Commands
- iqtree
Link to section 'Module' of 'iqtree' Module
You can load the modules by:
module load biocontainers
module load iqtree
Link to section 'Example job' of 'iqtree' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run IQ-TREE on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=iqtree
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers iqtree
iqtree -s input.phy -m GTR+I+G > test.out