scgen
Link to section 'Introduction' of 'scgen' Introduction
scGen is a generative model to predict single-cell perturbation response across cell types, studies and species.
Home page: https://github.com/theislab/scgen
Link to section 'Versions' of 'scgen' Versions
- 2.1.0
Link to section 'Commands' of 'scgen' Commands
- python
- python3
Link to section 'Module' of 'scgen' Module
You can load the modules by:
module load biocontainers
module load scgen
Link to section 'Example job' of 'scgen' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run scgen on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=scgen
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers scgen