mob_suite
Link to section 'Introduction' of 'mob_suite' Introduction
MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies.
Docker hub: https://hub.docker.com/r/kbessonov/mob_suite
Home page: https://github.com/phac-nml/mob-suite
Link to section 'Versions' of 'mob_suite' Versions
- 3.0.3
Link to section 'Commands' of 'mob_suite' Commands
- mob_cluster
- mob_init
- mob_recon
- mob_typer
Link to section 'Module' of 'mob_suite' Module
You can load the modules by:
module load biocontainers
module load mob_suite
Link to section 'Example job' of 'mob_suite' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run mob_suite on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=mob_suite
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers mob_suite