slamdunk
Link to section 'Introduction' of 'slamdunk' Introduction
Slamdunk is a novel, fully automated software tool for automated, robust, scalable and reproducible SLAMseq data analysis.
Docker hub: https://hub.docker.com/r/tobneu/slamdunk
Home page: http://t-neumann.github.io/slamdunk/
Link to section 'Versions' of 'slamdunk' Versions
- 0.4.3
Link to section 'Commands' of 'slamdunk' Commands
- slamdunk
- alleyoop
Link to section 'Module' of 'slamdunk' Module
You can load the modules by:
module load biocontainers
module load slamdunk
Link to section 'Example job' of 'slamdunk' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run slamdunk on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=slamdunk
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers slamdunk