mummer4
Link to section 'Introduction' of 'mummer4' Introduction
Mummer4 is a versatile alignment tool for DNA and protein sequences.
For more information, please check its website: https://biocontainers.pro/tools/mummer4 and its home page on Github.
Link to section 'Versions' of 'mummer4' Versions
- 4.0.0rc1-pl5262
Link to section 'Commands' of 'mummer4' Commands
- annotate
- combineMUMs
- delta-filter
- delta2vcf
- dnadiff
- exact-tandems
- mummer
- mummerplot
- nucmer
- promer
- repeat-match
- show-aligns
- show-coords
- show-diff
- show-snps
- show-tiling
Link to section 'Module' of 'mummer4' Module
You can load the modules by:
module load biocontainers
module load mummer4
Link to section 'Example job' of 'mummer4' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Mummer4 on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=mummer4
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers mummer4
mummer -mum -b -c H_pylori26695_Eslice.fasta H_pyloriJ99_Eslice.fasta > mummer.mums