barrnap
Link to section 'Introduction' of 'barrnap' Introduction
Barrnap: BAsic Rapid Ribosomal RNA Predictor.
For more information, please check its website: https://biocontainers.pro/tools/barrnap and its home page on Github.
Link to section 'Versions' of 'barrnap' Versions
- 0.9.4
Link to section 'Commands' of 'barrnap' Commands
- barrnap
Link to section 'Module' of 'barrnap' Module
You can load the modules by:
module load biocontainers
module load barrnap
Link to section 'Example job' of 'barrnap' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Barrnap on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=barrnap
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers barrnap
barrnap --kingdom bac -o bac_16s.fasta < bac_genome.fasta > bac_16s.gff3
barrnap --kingdom euk -o euk_16s.fasta < euk_genome.fasta > euk_16s.gff3