macrel
Link to section 'Introduction' of 'macrel' Introduction
Macrel is a pipeline to mine antimicrobial peptides (AMPs) from (meta)genomes.
BioContainers: https://biocontainers.pro/tools/macrel
Home page: https://github.com/BigDataBiology/macrel
Link to section 'Versions' of 'macrel' Versions
- 1.2.0
Link to section 'Commands' of 'macrel' Commands
- macrel
Link to section 'Module' of 'macrel' Module
You can load the modules by:
module load biocontainers
module load macrel
Link to section 'Example job' of 'macrel' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run macrel on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=macrel
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers macrel