pullseq
Link to section 'Introduction' of 'pullseq' Introduction
Pullseq is an utility program for extracting sequences from a fasta/fastq file.
BioContainers: https://biocontainers.pro/tools/pullseq
Home page: https://github.com/bcthomas/pullseq
Link to section 'Versions' of 'pullseq' Versions
- 1.0.2
Link to section 'Commands' of 'pullseq' Commands
- pcre-config
- pcregrep
- pcretest
- pullseq
- seqdiff
Link to section 'Module' of 'pullseq' Module
You can load the modules by:
module load biocontainers
module load pullseq
Link to section 'Example job' of 'pullseq' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run pullseq on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=pullseq
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers pullseq