agfusion
Link to section 'Introduction' of 'agfusion' Introduction
AGFusion (pronounced 'A G Fusion') is a python package for annotating gene fusions from the human or mouse genomes.
Docker hub: https://hub.docker.com/r/mgibio/agfusion
Home page: https://github.com/murphycj/AGFusion
Link to section 'Versions' of 'agfusion' Versions
- 1.3.11
Link to section 'Commands' of 'agfusion' Commands
- agfusion
Link to section 'Module' of 'agfusion' Module
You can load the modules by:
module load biocontainers
module load agfusion
Link to section 'Example job' of 'agfusion' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run agfusion on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=agfusion
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers agfusion