macs3
Link to section 'Introduction' of 'macs3' Introduction
MACS3 is Model-based Analysis of ChIP-Seq for identifying transcript factor.
Docker hub: https://hub.docker.com/r/lbmc/macs3/3.0.0a6 and its home page on Github.
Link to section 'Versions' of 'macs3' Versions
- 3.0.0a6
Link to section 'Commands' of 'macs3' Commands
- macs3
Link to section 'Module' of 'macs3' Module
You can load the modules by:
module load biocontainers
module load macs3
Link to section 'Example job' of 'macs3' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Macs3 on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=macs3
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers macs3
macs3 callpeak -t ChIP.bam -c Control.bam -f BAM -g hs -n test -B -q 0.01