pyvcf3
Link to section 'Introduction' of 'pyvcf3' Introduction
PyVCF3 has been created because the Official PyVCF repository is no longer maintained and do not accept any pull requests.
BioContainers: https://biocontainers.pro/tools/pyvcf3
Home page: https://github.com/dridk/PyVCF3
Link to section 'Versions' of 'pyvcf3' Versions
- 1.0.3
Link to section 'Commands' of 'pyvcf3' Commands
- python
- python3
Link to section 'Module' of 'pyvcf3' Module
You can load the modules by:
module load biocontainers
module load pyvcf3
Link to section 'Example job' of 'pyvcf3' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run pyvcf3 on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=pyvcf3
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers pyvcf3