clonalframeml
Link to section 'Introduction' of 'clonalframeml' Introduction
ClonalFrameML is a software package that performs efficient inference of recombination in bacterial genomes.
BioContainers: https://biocontainers.pro/tools/clonalframeml
Home page: https://github.com/xavierdidelot/ClonalFrameML
Link to section 'Versions' of 'clonalframeml' Versions
- 1.11
Link to section 'Commands' of 'clonalframeml' Commands
- ClonalFrameML
Link to section 'Module' of 'clonalframeml' Module
You can load the modules by:
module load biocontainers
module load clonalframeml
Link to section 'Example job' of 'clonalframeml' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run clonalframeml on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=clonalframeml
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers clonalframeml