trnascan-se
Link to section 'Introduction' of 'trnascan-se' Introduction
Trnascan-se is a convenient, ready-for-use means to identify tRNA genes in one or more query sequences.
For more information, please check its website: https://biocontainers.pro/tools/trnascan-se and its home page: http://lowelab.ucsc.edu/tRNAscan-SE/.
Link to section 'Versions' of 'trnascan-se' Versions
- 2.0.9
Link to section 'Commands' of 'trnascan-se' Commands
- tRNAscan-SE
Link to section 'Module' of 'trnascan-se' Module
You can load the modules by:
module load biocontainers
module load trnascan-se
Link to section 'Example job' of 'trnascan-se' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run Trnascan-se on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 12
#SBATCH --job-name=trnascan-se
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers trnascan-se
tRNAscan-SE --thread 12 -o tRNA.out \
-f rRNA.ss -m tRNA.stats genome.fasta