rnapeg
Link to section 'Introduction' of 'rnapeg' Introduction
RNApeg
is an RNA junction calling, correction, and quality-control package. RNAIndel supports GRCh38 and 37.
For more information, please check its Github package: https://github.com/stjude/RNApeg/pkgs/container/rnapeg and its home page on Github.
Link to section 'Versions' of 'rnapeg' Versions
- 2.7.1
Link to section 'Commands' of 'rnapeg' Commands
- RNApeg.sh
Link to section 'Module' of 'rnapeg' Module
You can load the modules by:
module load biocontainers
module load rnapeg
Link to section 'Example job' of 'rnapeg' Example job
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run RNApeg on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=rnapeg
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers rnapeg