modeltest-ng
Link to section 'Introduction' of 'modeltest-ng' Introduction
ModelTest-NG is a tool for selecting the best-fit model of evolution for DNA and protein alignments. ModelTest-NG supersedes jModelTest and ProtTest in one single tool, with graphical and command console interfaces.
BioContainers: https://biocontainers.pro/tools/modeltest-ng
Home page: https://github.com/ddarriba/modeltest
Link to section 'Versions' of 'modeltest-ng' Versions
- 0.1.7
Link to section 'Commands' of 'modeltest-ng' Commands
- modeltest-ng
- modeltest-ng-mpi
Link to section 'Module' of 'modeltest-ng' Module
You can load the modules by:
module load biocontainers
module load modeltest-ng
Link to section 'Example job' of 'modeltest-ng' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run modeltest-ng on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=modeltest-ng
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers modeltest-ng