rasusa
Link to section 'Introduction' of 'rasusa' Introduction
Rasusa: Randomly subsample sequencing reads to a specified coverage.
Docker hub: https://hub.docker.com/r/staphb/rasusa
Home page: https://github.com/mbhall88/rasusa
Link to section 'Versions' of 'rasusa' Versions
- 0.6.0
- 0.7.0
Link to section 'Commands' of 'rasusa' Commands
- rasusa
Link to section 'Module' of 'rasusa' Module
You can load the modules by:
module load biocontainers
module load rasusa
Link to section 'Example job' of 'rasusa' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run rasusa on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=rasusa
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers rasusa
rasusa -i seq_1.fq -i seq_2.fq \
--coverage 100 --genome-size 35mb \
-o out.r1.fq -o out.r2.fq