pasta
Link to section 'Introduction' of 'pasta' Introduction
PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid Sequences.
BioContainers: https://biocontainers.pro/tools/pasta
Home page: https://github.com/smirarab/pasta
Link to section 'Versions' of 'pasta' Versions
- 1.8.7
Link to section 'Commands' of 'pasta' Commands
- run_pasta.py
- run_seqtools.py
- sumlabels.py
- sumtrees.py
Link to section 'Module' of 'pasta' Module
You can load the modules by:
module load biocontainers
module load pasta
Link to section 'Example job' of 'pasta' Example job
Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.
To run pasta on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=pasta
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers pasta